Available Data
Most data associated with the DSPR is available here. Please note that all genome positions in the subsequent data tables are based on release 5 of the D. melanogaster genome sequence (FlyBase recently updated to release 6, so positions will need to be converted for use on FlyBase.) If you would like to request data that does not appear here, please contact DSPR(flyrils@gmail.com)
Phenotype Data
Chemotherapy Drug Toxicity
- Carboplatin, Gemcitabine, Methotrexate, and Mitomycin C Toxicity
- Description of Carboplatin, Gemcitabine, Methotrexate, and Mitomycin C Toxicity File
Learning and Memory
Nicotine Resistance
Gene Expression Data
Female Heads (Nimblegen Arrays)
- DESCRIPTION OF EXPRESSION DATA FILES
- Pre-Processed Expression Data (15 MB)
- LOD scores for all genes (1.2 GB)
- Raw Nimblegen Pair Files (1.5 GB)
- Array IDs (identifies which cross is in which array/zone)
IIS/TOR Targeted Expression on Whole Bodies (OpenArray)
Genomic Data for Founders and RILs
Most Recent Santa Cruz Browser Track
Release 4
- DESCRIPTIONS OF ALL DATA FILES
- Founder SNP Table (40 MB)
- Founder Transposable Element Table (760 KB)
- RILs SNP Table (70 MB)
- HMM Results for pA RILs (at regularly spaced 10 kb intervals) (2 GB)
- HMM Results for pB RILs (at regularly spaced 10 kb intervals) (2GB)
- HMM Results for pA RILs (at the RAD markers) (2GB)
- HMM Results for pB RILs (at the RAD markers) (2GB)
- List of Regularly Spaced Positions Every 10KB
Release 3
- Note: An error in the sample ids was discovered and corrected in this file. It was updated April 10, 2015. Please update your file if you obtained it prior to this date. Affected samples included AB8, 3RA2, B5xSS, B5xSAM
- Founder Transposable Element Table (760 KB)
- RILs SNP Table (70 MB)
- HMM Results for pA RILs (at regularly spaced 10 kb intervals) (2 GB)
- HMM Results for pB RILs (at regularly spaced 10 kb intervals) (2GB)
- HMM Results for pA RILs (at the RAD markers) (2GB)
- HMM Results for pB RILs (at the RAD markers) (2GB)
- List of Regularly Spaced Positions Every 10KB
Release 2
- DESCRIPTIONS OF ALL DATA FILES
- Founder SNP Table (160 MB)
- RILs SNP Table (70 MB)
- HMM Results for pA RILs (at regularly spaced 10 kb intervals) (2 GB)
- HMM Results for pB RILs (at regularly spaced 10 kb intervals) (2GB)
- HMM Results for pA RILs (at the RAD markers) (2GB)
- HMM Results for pB RILs (at the RAD markers) (2GB)
- List of Regularly Spaced Positions Every 10KB
Release 1
- DESCRIPTIONS OF ALL DATA FILES
- Founder SNP Table (160 MB)
- RILs SNP Table (70 MB)
- HMM Results for pA RILs (at regularly spaced 10 kb intervals) (2 GB)
- HMM Results for pB RILs (at regularly spaced 10 kb intervals) (2GB)
- HMM Results for pA RILs (at the RAD markers) (2GB)
- HMM Results for pB RILs (at the RAD markers) (2GB)
- List of Regularly Spaced Positions Every 10KB
Raw FASTQ files
- DESCRIPTIONS OF RAW DATA FILES
- Founder Re-sequencing Data (145 GB)
- RIL RAD Data (135 GB)
- RIL Re-sequencing Data for 4 RILs (28 GB)
Supplementary Information from:
King, E. G., C. M. Merkes, C. L. McNeil, S. R. Hoofer, S. Sen, K. W. Broman, A. D. Long & S. J. Macdonald. 2012. Genetic dissection of a model complex trait using the Drosophila Synthetic Population Resource. Genome Research. 22: 1558-1566
- DESCRIPTIONS OF ALL TABLES (README.txt)
- Supplementary Table 2 (375 MB)
- Supplementary Table 3a (160 MB)
- Supplementary Table 3b (70 MB)
- Supplementary Table 4a (2 GB)
- Supplementary Table 4b (2 GB)
- Supplementary Table 6a (10 KB)
- Supplementary Table 6b ( 30 KB)
- Supplementary Table 7 (89 KB).