genome Mzeb
twoBitPath Mzeb/Mzeb.2bit
trackDb Mzeb/trackDb.txt
groups groups.txt
htmlPath Mzeb/description.html
description Mzeb
organism Mzeb
orderKey 4800
scientificName Mzeb
defaultPos LG1:100000-100100
blat wfitch.bio.uci.edu 17779

#### Mzeb/trackDb.txt
track hubCentral
compositeTrack on
shortLabel my hub
longLabel my hub
group comphub
subGroup1 view Track_Type Snake=Alignments  
subGroup2 orgs Organisms Drer=Drer Onil=Onil Mzeb=Mzeb
dragAndDrop subTracks
#allButtonPair on
dimensions dimensionX=view dimensionY=orgs
noInherit on
priority 0
centerLabelsDense on
visibility full
html ../documentation/hubCentral
type bigBed 3

	track hubCentralAlignments
	shortLabel Alignments
	view Alignments
	visibility full
	subTrack hubCentral

		track snakeDrer
		longLabel Drer
		shortLabel Drer
		otherSpecies Drer
		visibility full
		parent hubCentralAlignments
		showSnpWidth 2898
		priority 4
		bigDataUrl ../lod.txt
		type halSnake
		group snake
		subGroups view=Snake orgs=Drer

		track snakeOnil
		longLabel Onil
		shortLabel Onil
		otherSpecies Onil
		visibility full
		parent hubCentralAlignments
		showSnpWidth 2898
		priority 4
		bigDataUrl ../lod.txt
		type halSnake
		group snake
		subGroups view=Snake orgs=Onil

		track snakeMzeb
		longLabel Mzeb
		shortLabel Mzeb
		otherSpecies Mzeb
		visibility full
		parent hubCentralAlignments
		showSnpWidth 2898
		priority 4
		bigDataUrl ../lod.txt
		type halSnake
		group snake
		subGroups view=Snake orgs=Mzeb

track alignability
bigDataUrl Mzeb.alignability.bw
shortLabel Alignability
longLabel Alignability from Progressive Cactus
type bigWig

track genes_
compositeTrack on
shortLabel Genes
longLabel Genes and Gene liftovers
group genes
priority 149.1
visibility dense
type bed 3 .
noInherit on
html ../trackDescriptions/genes

    track genesMzeb_
    parent genes_
    shortLabel Mzeb
    longLabel M. zeb. gene annotation
    priority 5
    spectrum on
    maxWindowToDraw 10000000
    colorByStrand 50,50,150 150,50,50
    type bigBed 12 +
    searchIndex name
    bigDataUrl Genes/M_zeb.Bed12.bigBed

    track genesMzebDrer_
    parent genes_
    shortLabel MzebDrer
    longLabel M. zeb gene annotations with D. rer names (protein blast)
    priority 6
    spectrum on
    maxWindowToDraw 10000000
    colorByStrand 50,50,150 150,50,50
    type bigBed 12 +
    searchIndex name, name2
    searchIndex name, name3
    bigDataUrl Genes/M_zeb.2.D_rer.bigBed
    searchTrix Genes/M_zeb.2.D_rer.symbol.ix
    searchTrix Genes/M_zeb.2.D_rer.fullname.ix
    labelFields name3